Stukel, M. R., Ohman, M. D., Kelly, T. B., & Biard, T. (2019). The Roles of Suspension-Feeding and Flux-Feeding Zooplankton as Gatekeepers of Particle Flux Into the Mesopelagic Ocean in the Northeast Pacific. Front. Mar. Sci. , 6 .
Abstract: Zooplankton are important consumers of sinking particles in the ocean's twilight zone. However, the impact of different taxa depends on their feeding mode. In contrast to typical suspension-feeding zooplankton, flux-feeding taxa preferentially consume rapidly sinking particles that would otherwise penetrate into the deep ocean. To quantify the potential impact of two flux-feeding zooplankton taxa [Aulosphaeridae (Rhizaria), and Limacina helicina (euthecosome pteropod)] and the total suspension-feeding zooplankton community, we measured depth-stratified abundances of these organisms during six cruises in the California Current Ecosystem. Using allometric-scaling relationships, we computed the percentage of carbon flux intercepted by flux feeders and suspension feeders. These estimates were compared to direct measurements of carbon flux attenuation (CFA) made using drifting sediment traps and U-238-Th-234 disequilibrium. We found that CFA in the shallow twilight zone typically ranged from 500 to 1000 m mol organic C flux remineralized per 10-m vertical depth bin. This equated to approximately 6-10% of carbon flux remineralized/10 m. The two flux-feeding taxa considered in this study could account for a substantial proportion of this flux near the base of the euphotic zone. The mean flux attenuation attributable to Aulosphaeridae was 0.69%/10 m (median = 0.21%/10 m, interquartile range = 0.04-0.81%) at their depth of maximum abundance (similar to 100 m), which would equate to similar to 10% of total flux attenuation in this depth range. The maximum flux attenuation attributable to Aulosphaeridae reached 4.2%/10 m when these protists were most abundant. L. helicina, meanwhile, could intercept 0.45-1.6% of carbon flux/10 m, which was slightly greater (on average) than the Aulosphaeridae. In contrast, suspension-feeding zooplankton in the mesopelagic (including copepods, euphausiids, appendicularians, and ostracods) had combined clearance rates of 2-81 L m(-3) day(-1) (mean of 19.6 L m(-3) day(-1)). This implies a substantial impact on slowly sinking particles, but a negligible impact on the presumably rapidly sinking fecal pellets that comprised the majority of the material collected in sediment traps. Our results highlight the need for a greater research focus on the many taxa that potentially act as flux feeders in the oceanic twilight zone.
Armstrong, E. M., Bourassa, M. A., Cram, T. A., DeBellis, M., Elya, J., Greguska III, F. R., et al. (2019). An Integrated Data Analytics Platform. Front. Mar. Sci. , 6 , 354.
Abstract: An Integrated Science Data Analytics Platform is an environment that enables the confluence of resources for scientific investigation. It harmonizes data, tools and computational resources to enable the research community to focus on the investigation rather than spending time on security, data preparation, management, etc. OceanWorks is a NASA technology integration project to establish a cloud-based Integrated Ocean Science Data Analytics Platform for big ocean science at NASA’s Physical Oceanography Distributed Active Archive Center (PO.DAAC) for big ocean science. It focuses on advancement and maturity by bringing together several NASA open-source, big data projects for parallel analytics, anomaly detection, in situ to satellite data matchup, quality-screened data subsetting, search relevancy, and data discovery. Our communities are relying on data available through distributed data centers to conduct their research. In typical investigations, scientists would (1) search for data, (2) evaluate the relevance of that data, (3) download it, and (4) then apply algorithms to identify trends, anomalies, or other attributes of the data. Such a workflow cannot scale if the research involves a massive amount of data or multi-variate measurements. With the upcoming NASA Surface Water and Ocean Topography (SWOT) mission expected to produce over 20PB of observational data during its 3-year nominal mission, the volume of data will challenge all existing Earth Science data archival, distribution and analysis paradigms. This paper discusses how OceanWorks enhances the analysis of physical ocean data where the computation is done on an elastic cloud platform next to the archive to deliver fast, web-accessible services for working with oceanographic measurements.
Fox-Kemper, B., Adcroft, A., Böning, C. W., Chassignet, E. P., Curchitser, E., Danabasoglu, G., et al. (2019). Challenges and Prospects in Ocean Circulation Models. Front. Mar. Sci. , 6 .
Abstract: We revisit the challenges and prospects for ocean circulation models following Griffies et al. (2010). Over the past decade, ocean circulation models evolved through improved understanding, numerics, spatial discretization, grid configurations, parameterizations, data assimilation, environmental monitoring, and process-level observations and modeling. Important large scale applications over the last decade are simulations of the Southern Ocean, the Meridional Overturning Circulation and its variability, and regional sea level change. Submesoscale variability is now routinely resolved in process models and permitted in a few global models, and submesoscale effects are parameterized in most global models. The scales where nonhydrostatic effects become important are beginning to be resolved in regional and process models. Coupling to sea ice, ice shelves, and high-resolution atmospheric models has stimulated new ideas and driven improvements in numerics. Observations have provided insight into turbulence and mixing around the globe and its consequences are assessed through perturbed physics models. Relatedly, parameterizations of the mixing and overturning processes in boundary layers and the ocean interior have improved. New diagnostics being used for evaluating models alongside present and novel observations are briefly referenced. The overall goal is summarizing new developments in ocean modeling, including how new and existing observations can be used, what modeling challenges remain, and how simulations can be used to support observations.
Stukel, M. R., & Barbeau, K. A. (2020). Investigating the Nutrient Landscape in a Coastal Upwelling Region and Its Relationship to the Biological Carbon Pump. Geophys. Res. Lett. , 47 (6), e2020GL087351.
Abstract: We investigated nutrient patterns and their relationship to vertical carbon export using results from 38 Lagrangian experiments in the California Current Ecosystem. The dominant mode of variability reflected onshore-offshore nutrient gradients. A secondary mode of variability was correlated with silica excess and dissolved iron and likely reflects regional patterns of iron-limitation. The biological carbon pump was enhanced in high nutrient and Fe-stressed regions. Patterns in the nutrient landscape proved to be better predictors of the vertical flux of sinking particles than contemporaneous measurements of net primary production. Our results suggest an important role for Fe-stressed diatoms in vertical carbon flux. They also suggest that either preferential recycling of N or non-Redfieldian nutrient uptake by diatoms may lead to high PO:NO and Si(OH):NO ratios, following export of P- and Si-enriched organic matter. Increased export following Fe-stress may partially explain inverse relationships between net primary productivity and export efficiency.
Liu, M., Lin, J., Wang, Y., Sun, Y., Zheng, B., Shao, J., et al. (2018). Spatiotemporal variability of NO2 and PM2.5 over Eastern China: observational and model analyses with a novel statistical method. Atmos. Chem. Phys. , 18 (17), 12933–12952.
Abstract: Eastern China (27-41 degrees N, 110-123 degrees E) is heavily polluted by nitrogen dioxide (NO2), particulate matter with aerodynamic diameter below 2.5 mu m (PM2.5), and other air pollutants. These pollutants vary on a variety of temporal and spatial scales, with many temporal scales that are nonperiodic and nonstationary, challenging proper quantitative characterization and visualization. This study uses a newly compiled EOF-EEMD analysis visualization package to evaluate the spatiotemporal variability of ground-level NO2, PM2.5, and their associations with meteorological processes over Eastern China in fall-winter 2013. Applying the package to observed hourly pollutant data reveals a primary spatial pattern representing Eastern China synchronous variation in time, which is dominated by diurnal variability with a much weaker day-to-day signal. A secondary spatial mode, representing north-south opposing changes in time with no constant period, is characterized by wind-related dilution or a buildup of pollutants from one day to another.
Morey, S. L., Wienders, N., Dukhovskoy, D. S., & Bourassa, M. A. (2018). Impact of Stokes Drift on Measurements of Surface Currents from Drifters and HF Radar. In American Geophysical Union (Vol. Fall Meeting).
Abstract: Concurrent measurements by surface drifters of different configurations and HF radar reveal substantial differences in estimates of the near-surface seawater velocity. On average, speeds of small ultra-thin (5 cm) drifters are significantly greater than co-located drifters with a traditional shallow drogue design, while velocity measurements from the drogued drifters closely match HF radar velocity estimates. Analysis of directional wave spectra measurements from a nearby buoy reveals that Stokes drift accounts for much of the difference between the velocity measurements from the drogued drifters and the ultra-thin drifters, except during times of wave breaking. Under wave breaking conditions, the difference between the ultra-thin drifter velocity and the drogued drifter velocity is much less than the computed Stokes drift. The results suggest that surface currents measured by more common approaches or simulated in models may underrepresent the velocity at the very surface of the ocean that is important for determining momentum and enthalpy fluxes between the ocean and atmosphere and for estimating transport of material at the ocean surface. However, simply adding an estimate of Stokes drift may also not be an appropriate method for estimating the true surface velocity from models or measurements from drogued drifters or HF radar under all sea conditions.
Armstrong, E. M., Bourassa, M. A., Cram, T., Elya, J. L., Greguska, F. R., III, Huang, T., et al. (2018). An information technology foundation for fostering interdisciplinary oceanographic research and analysis. In American Geophysical Union (Vol. Fall Meeting).
Abstract: Before complex analysis of oceanographic or any earth science data can occur, it must be placed in the proper domain of computing and software resources. In the past this was nearly always the scientist's personal computer or institutional computer servers. The problem with this approach is that it is necessary to bring the data products directly to these compute resources leading to large data transfers and storage requirements especially for high volume satellite or model datasets. In this presentation we will present a new technological solution under development and implementation at the NASA Jet Propulsion Laboratory for conducting oceanographic and related research based on satellite data and other sources. Fundamentally, our approach for satellite resources is to tile (partition) the data inputs into cloud-optimized and computation friendly databases that allow distributed computing resources to perform on demand and server-side computation and data analytics. This technology, known as NEXUS, has already been implemented in several existing NASA data portals to support oceanographic, sea-level, and gravity data time series analysis with capabilities to output time-average maps, correlation maps, Hovmöller plots, climatological averages and more. A further extension of this technology will integrate ocean in situ observations, event-based data discovery (e.g., natural disasters), data quality screening and additional capabilities. This particular activity is an open source project known as the Apache Science Data Analytics Platform (SDAP) (https://sdap.apache.org), and colloquially as OceanWorks, and is funded by the NASA AIST program. It harmonizes data, tools and computational resources for the researcher allowing them to focus on research results and hypothesis testing, and not be concerned with security, data preparation and management. We will present a few oceanographic and interdisciplinary use cases demonstrating the capabilities for characterizing regional sea-level rise, sea surface temperature anomalies, and ocean hurricane responses.
Morrison, T., Dukhovskoy, D. S., McClean, J., Gille, S. T., & Chassignet, E. (2018). Causes of the anomalous heat flux onto the Greenland continental shelf. In American Geophysical Union (Vol. Fall Meeting).
Abstract: On the continental shelf around Greenland, warm-salty Atlantic water at depth fills the deep narrow fjords where Greenland's tidewater glaciers terminate. Changes in the quantity or properties of this water mass starting in the mid 1990s is thought to be largely responsible for increased ocean-driven melting of the Greenland Ice Sheet. Using high-resolution (nominal 0.1-degree) ocean circulation models we cannot accurately resolve small-scale processes on the shelf or within fjords. However, we can assess changes in the flux of heat via Atlantic water onto the continental shelf. To understand the causes of the anomalous heat that has reached the shelf we examine heat content of subtropical gyre water and shifts in the North Atlantic and Atlantic Multidecadal Oscillations.
O'hara, S. H., Arko, R. A., Clark, D., Chandler, C. L., Elya, J. L., Ferrini, V. L., et al. (2018). Rolling Deck to Repository (R2R) Program Data Services for the Oceanographic Research Community. In American Geophysical Union (Vol. American Geophysical Union, Fall Meeting 2018).
Abstract: Research vessels supported by NSF are critical platforms contributing to academic oceanographic research in the US. The “underway” data sets obtained from the continuously operating geophysical, water column, and meteorological sensors aboard these vessels provide characterization of basic environmental conditions for the oceans and are of high scientific value for building global syntheses, climatologies, and historical time series of ocean properties (e.g the World Ocean Atlas, the GMRT bathymetric synthesis, ICOADS). The Rolling deck to Repository program (www.rvdata.us) provides a central shore-side data gateway that ensures the basic documentation, assessment and submission of all environmental data from ship operators to the NOAA long-term archives for these data. R2R provides a set of data services for the oceanographic research community, including: publishing an online, searchable and browsable master cruise catalog, supported by cruise and data set DOIs; organizing, archiving, and disseminating original underway data and documents; assessing data quality on select data types; creating select post-field data products; and supporting at-sea event logging. In this presentation we will discuss new developments in R2R data services and challenges associated with ship-based data management. A significant challenge is the dramatic increase in data volumes associated with new sensors (e.g. the EK80 Sonar systems) whereby individual cruise distributions can be several terabytes. Ship operators, R2R and NCEI must design a way to move and store these growing volumes. R2R is also working to make information more accessible and complete. A new website has been launched along with API web services that allow users to find and use data more easily. R2R is working to improve device metadata, including working to identify the time sources for all environmental sensors to support accurate comparison and merging of data sets.
Zheng, Y., Bourassa, M. A., & Dukhovskoy, D. S. (2018). Upper-Ocean Processes Controlling the Sea Surface Temperature in the Western Gulf of Mexico. In American Geophysical Union (Vol. Fall Meeting).
Abstract: This study examines the upper-ocean processes controlling the mixed layer temperature in the western Gulf of Mexico (GOM) through estimating the contributing terms in the heat equation, with an emphasis on eddies' role. The major heat contributing terms for the upper GOM were estimated using two ocean reanalysis datasets: an eddy-resolving HYbrid Coordinate Ocean Model (HYCOM) and a Simple Ocean Data Assimilation (SODA). Analysis of net surface heat fluxes from four datasets reveals that the long-term mean net surface heat flux cools the northern GOM and warms the southern GOM. Two regions are focused for analysis: an eddy-rich region where LCEs are energetic, and the southwestern Gulf where eddy activity is relatively weak and the features of near surface temperature differ from the eddy-rich region. An eddy-rich region in the western GOM is defined based on the eddy kinetic energy derived from satellite sea surface heights. The long-term mean horizontal heat advection causes a weak warming over most of the eddy rich region, partly attributed to the flow-temperature configuration that the long-term and seasonally mean flow is nearly parallel to the corresponding mean isotherms. By contrast, the temporal mean vertical heat advection causes a strong warming in the eddy rich region, partly balancing the cooling caused by net surface heat flux. The temporal mean eddy heat flux convergence in the western GOM, whose positive and negative values are not small at some locations, appears heterogeneous in space, resulting in a small term for the western GOM when area averaged. The persistent warm water in the southwestern Gulf is primarily caused by the net warming from net surface heat flux rather than from eddies and heat advection.
